STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR93818.1Exodeoxyribonuclease I subunit C. (490 aa)    
Predicted Functional Partners:
SDS98848.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
 
 0.871
SDS81357.1
Exonuclease RecJ.
    
 
 0.786
SDR93758.1
Hypothetical protein.
       0.667
SDR93714.1
Protein of unknown function.
       0.665
rnhA
RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.505
SDR93668.1
Hypothetical protein.
       0.464
SDR93617.1
Universal stress protein E.
     
 0.460
SDS35543.1
Type IV pilus assembly protein PilZ.
  
     0.406
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.