STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR95316.1Diguanylate cyclase (GGDEF) domain-containing protein. (795 aa)    
Predicted Functional Partners:
SDR72149.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.976
SDT07161.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.976
SDS79902.1
Multi-sensor hybrid histidine kinase.
  
 
 0.975
SDT14297.1
Response regulator receiver modulated diguanylate cyclase.
 
 0.974
SDR95427.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.962
SDS64252.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.960
SDS15251.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 
0.958
SDS15781.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.950
SDS81288.1
Diguanylate cyclase/phosphodiesterase.
 
0.949
SDR79026.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.947
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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