STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR95367.1Hypothetical protein. (428 aa)    
Predicted Functional Partners:
SDS96930.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
   
 0.853
SDR95316.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.812
SDR85649.1
Hypothetical protein.
  
     0.755
SDS16097.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.727
SDS65845.1
PAS fold-containing protein.
   
 0.658
SDS16945.1
PKHD-type hydroxylase.
  
 
  0.657
SDS74444.1
Na+/proline symporter.
   
 0.629
SDS64462.1
PAS domain S-box-containing protein.
    
 0.612
SDT10310.1
PAS domain S-box-containing protein.
    
 0.612
SDS70419.1
ATP-binding cassette, subfamily B.
  
  
  0.607
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.