STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR99193.1Capsule biosynthesis GfcC. (296 aa)    
Predicted Functional Partners:
SDR99697.1
Tyrosine-protein kinase Etk/Wzc.
  
 0.991
SDS94939.1
Capsular exopolysaccharide family.
  
 0.991
SDR99377.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.974
SDS95083.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.974
SDR99151.1
Exopolysaccharide biosynthesis protein YbjH.
 
   
 0.927
SDS00422.1
Lipopolysaccharide transport system ATP-binding protein.
  
  
 0.867
SDS00378.1
Lipopolysaccharide transport system permease protein.
  
  
 0.863
SDR99242.1
Group 4 capsule polysaccharide lipoprotein gfcB, YjbF.
     
 0.802
SDR99294.1
Polysaccharide export outer membrane protein.
       0.790
SDS00830.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.679
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.