STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS00924.1Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase. (327 aa)    
Predicted Functional Partners:
SDS30238.1
4-amino-4-deoxy-L-arabinose transferase.
 
 
 0.917
SDS00971.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
  
 
 0.868
SDS01041.1
Protoporphyrinogen oxidase.
 
   
 0.798
SDS00881.1
Nucleoside-diphosphate-sugar epimerase.
     
 0.780
SDS01086.1
Hypothetical protein.
       0.737
SDR88108.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.729
SDS95083.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.654
SDR99377.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.638
SDR70166.1
Trehalose 6-phosphate phosphatase/trehalose 6-phosphate synthase/phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
     
 0.633
SDS00619.1
UDP-glucose pyrophosphorylase.
    
 0.604
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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