STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS12463.1ABC-type uncharacterized transport system, substrate-binding protein. (294 aa)    
Predicted Functional Partners:
SDS12514.1
Iron complex outermembrane recepter protein.
 
   
 0.920
SDS12399.1
Signal transduction histidine kinase.
  
 
 0.869
SDT24777.1
Hypothetical protein.
    
  0.796
SDT04139.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
 
  
  0.795
SDS28309.1
Signal transduction histidine kinase.
  
 
  0.749
SDT10328.1
PAS domain S-box-containing protein.
    
  0.747
SDS30745.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
  0.743
SDS54263.1
PAS/PAC sensor hybrid histidine kinase.
    
  0.743
SDS54406.1
PAS/PAC sensor hybrid histidine kinase.
    
  0.743
SDT14393.1
PAS domain S-box-containing protein.
    
  0.738
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.