STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS15920.1Pilus assembly protein FimV. (714 aa)    
Predicted Functional Partners:
SDS73314.1
Protein of unknown function.
  
 
 
 0.863
SDT09854.1
Ig-like domain-containing protein.
    
 
 0.845
SDT26326.1
Type IV pilus assembly protein PilN.
  
  
 0.843
SDS27028.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.827
SDS80608.1
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.827
SDT26432.1
Type IV pilus assembly protein PilQ.
  
  
 0.803
SDT26365.1
Type IV pilus assembly protein PilO.
  
  
 0.794
SDT26291.1
Type IV pilus assembly protein PilM.
  
  
 0.778
SDT04139.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
  
 0.766
SDT26393.1
Type IV pilus assembly protein PilP.
  
    0.763
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.