STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS29679.1Two component transcriptional regulator, LuxR family. (230 aa)    
Predicted Functional Partners:
SDS79902.1
Multi-sensor hybrid histidine kinase.
 
 
 0.991
SDS28309.1
Signal transduction histidine kinase.
 
 0.972
SDS65845.1
PAS fold-containing protein.
 
 0.963
SDS74444.1
Na+/proline symporter.
   
 0.956
SDS12399.1
Signal transduction histidine kinase.
 
 
 0.955
SDT10328.1
PAS domain S-box-containing protein.
   
 0.955
SDT24777.1
Hypothetical protein.
  
 0.955
SDS48998.1
Signal transduction histidine kinase.
 
 
 0.954
SDS73471.1
PAS domain S-box-containing protein.
 
 0.952
SDS64462.1
PAS domain S-box-containing protein.
   
 0.945
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.