Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDR82480.1 | SDT02008.1 | SAMN05216421_0394 | SAMN05216421_2714 | Hypothetical protein. | Ubiquinone biosynthesis protein UbiJ. | 0.550 |
SDR82480.1 | SDT12426.1 | SAMN05216421_0394 | SAMN05216421_2952 | Hypothetical protein. | ATP synthase protein I. | 0.606 |
SDT02008.1 | SDR82480.1 | SAMN05216421_2714 | SAMN05216421_0394 | Ubiquinone biosynthesis protein UbiJ. | Hypothetical protein. | 0.550 |
SDT02008.1 | SDT12426.1 | SAMN05216421_2714 | SAMN05216421_2952 | Ubiquinone biosynthesis protein UbiJ. | ATP synthase protein I. | 0.594 |
SDT12426.1 | SDR82480.1 | SAMN05216421_2952 | SAMN05216421_0394 | ATP synthase protein I. | Hypothetical protein. | 0.606 |
SDT12426.1 | SDT02008.1 | SAMN05216421_2952 | SAMN05216421_2714 | ATP synthase protein I. | Ubiquinone biosynthesis protein UbiJ. | 0.594 |
SDT12426.1 | atpA | SAMN05216421_2952 | SAMN05216421_2947 | ATP synthase protein I. | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.725 |
SDT12426.1 | atpB | SAMN05216421_2952 | SAMN05216421_2951 | ATP synthase protein I. | F-type H+-transporting ATPase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.977 |
SDT12426.1 | atpE | SAMN05216421_2952 | SAMN05216421_2950 | ATP synthase protein I. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.947 |
SDT12426.1 | atpF | SAMN05216421_2952 | SAMN05216421_2949 | ATP synthase protein I. | F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.737 |
SDT12426.1 | atpG | SAMN05216421_2952 | SAMN05216421_2946 | ATP synthase protein I. | ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.614 |
SDT12426.1 | atpH | SAMN05216421_2952 | SAMN05216421_2948 | ATP synthase protein I. | F-type H+-transporting ATPase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.921 |
SDT12426.1 | rplN | SAMN05216421_2952 | SAMN05216421_2656 | ATP synthase protein I. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.617 |
SDT12426.1 | rsmG | SAMN05216421_2952 | SAMN05216421_2955 | ATP synthase protein I. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.553 |
atpA | SDT12426.1 | SAMN05216421_2947 | SAMN05216421_2952 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase protein I. | 0.725 |
atpA | atpB | SAMN05216421_2947 | SAMN05216421_2951 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | F-type H+-transporting ATPase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.999 |
atpA | atpE | SAMN05216421_2947 | SAMN05216421_2950 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
atpA | atpF | SAMN05216421_2947 | SAMN05216421_2949 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.999 |
atpA | atpG | SAMN05216421_2947 | SAMN05216421_2946 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
atpA | atpH | SAMN05216421_2947 | SAMN05216421_2948 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | F-type H+-transporting ATPase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
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