STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT24838.1Isoquinoline 1-oxidoreductase, beta subunit. (728 aa)    
Predicted Functional Partners:
SDT24872.1
Isoquinoline 1-oxidoreductase, alpha subunit.
 0.999
SDS30567.1
Xanthine dehydrogenase YagT iron-sulfur-binding subunit.
 0.993
SDS30529.1
Xanthine dehydrogenase YagS FAD-binding subunit.
 
 0.978
SDS30674.1
Xanthine dehydrogenase accessory factor.
 
 
 0.912
SDS30619.1
Molybdenum cofactor cytidylyltransferase.
 
  
 0.825
mtaD
5-methylthioadenosine/S-adenosylhomocysteine deaminase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
  
 
 0.581
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
    
 0.561
SDS08413.1
Nicotinamidase-related amidase.
    
  0.546
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
    
  0.543
SDS34939.1
Quinohemoprotein ethanol dehydrogenase.
 
  
 0.532
Your Current Organism:
Pseudomonas xinjiangensis
NCBI taxonomy Id: 487184
Other names: CCTCC AB 207151, NRRL B-51270, P. xinjiangensis, Pseudomonas sp. S3-3, Pseudomonas xinjiangensis Liu et al. 2009, strain S3-3
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