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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM86344.1DNA-binding transcriptional regulator, FadR family. (245 aa)    
Predicted Functional Partners:
SDM86385.1
NADP-dependent aldehyde dehydrogenase.
    
  0.780
SDL02944.1
Transcriptional regulator, GntR family.
  
    0.770
SDM90281.1
Transcriptional regulator, GntR family.
  
    0.767
SDL66849.1
Transcriptional regulator, GntR family.
  
    0.765
SDK96537.1
Transcriptional regulator, GntR family.
  
    0.755
SDM26285.1
Transcriptional regulator, GntR family.
  
    0.754
SDM35318.1
Transcriptional regulator, GntR family.
  
    0.735
SDL28227.1
DNA-binding transcriptional regulator, GntR family.
  
    0.732
SDM29197.1
Transcriptional regulator, GntR family.
  
    0.731
SDL60294.1
Transcriptional regulator, GntR family.
  
    0.695
Your Current Organism:
Halomonas pantelleriensis
NCBI taxonomy Id: 48727
Other names: ATCC 700273, CIP 105506, DSM 9661, H. pantelleriensis, Halomonas pantelleriense, LMG 19550, LMG:19550, strain AAP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.