STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APV35098.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)    
Predicted Functional Partners:
APV35099.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.972
APV35096.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.855
APV35097.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.855
APV35095.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
    0.685
APV35093.1
YbaB/EbfC family nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
    0.670
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
       0.639
APV35597.1
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.456
Your Current Organism:
Acinetobacter soli
NCBI taxonomy Id: 487316
Other names: Acinetobacter soli Kim et al. 2009, Acinetobacter sp. Ba6, JCM 15062, KCTC 22184
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.