STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM19784.1Flagellin FlaB; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella. (276 aa)    
Predicted Functional Partners:
SFM88682.1
Flagellar protein FlaD.
 
  
 0.854
SFM89602.1
Archaellum component FlaD/FlaE.
 
  
 0.852
SFM88786.1
Flagellar protein FlaJ.
 
  
 0.819
SFM88740.1
Flagellar protein FlaH.
 
  
 0.808
SFM88763.1
Flagellar protein FlaI.
 
  
 0.683
SFM73205.1
Hypothetical protein.
  
     0.512
trmY
tRNA (pseudouridine54-N1)-methyltransferase; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
    0.507
SFM77719.1
Hypothetical protein.
  
     0.492
SFM19816.1
Peptidylprolyl isomerase.
       0.462
SFM19840.1
Hypothetical protein.
       0.448
Your Current Organism:
Methanolobus profundi
NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.