STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM23408.1Iron-regulated ABC transporter ATPase subunit SufC. (248 aa)    
Predicted Functional Partners:
SFM23436.1
Hypothetical protein.
 
 0.999
SFM91974.1
Cysteine desulfurase.
 
  
 0.919
SFM76362.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.911
SFM41222.1
Cysteine desulfurase / selenocysteine lyase.
 
  
 0.902
SFM30059.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.831
SFM46381.1
Nitrogen fixation protein NifU.
  
  
 0.831
SFM49176.1
Iron-sulfur cluster insertion protein.
  
 
 0.820
SFM68179.1
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.652
SFM23458.1
Hypothetical protein.
       0.583
SFM23385.1
Predicted transcriptional regulator.
       0.455
Your Current Organism:
Methanolobus profundi
NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM
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