STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM29223.1PhnB protein. (140 aa)    
Predicted Functional Partners:
SFM41414.1
Glyoxylase, beta-lactamase superfamily II.
  
 
 0.948
SFM29193.1
NADPH:quinone reductase.
 
 0.901
SFM15374.1
F420H2 dehydrogenase subunit I.
  
 
 0.883
SFM42960.1
Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily.
  
 
 0.837
SFM72016.1
Cysteine synthase A; Non-canonical start codon; manually curated.
  
 
 0.835
SFM59594.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.830
trpB-2
Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
 0.829
SFM55646.1
Citrate synthase.
    
 0.826
SFM31429.1
HD domain-containing protein.
  
 
  0.818
SFM27690.1
fatty-acyl-CoA synthase.
  
 
 0.815
Your Current Organism:
Methanolobus profundi
NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM
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