Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM16290.1 | SFM44674.1 | SAMN04488696_0127 | SAMN04488696_1248 | 4-hydroxybenzoate synthetase (chorismate-pyruvate lyase). | Hypothetical protein. | 0.560 |
SFM16290.1 | SFM55706.1 | SAMN04488696_0127 | SAMN04488696_1582 | 4-hydroxybenzoate synthetase (chorismate-pyruvate lyase). | Formylmethanofuran dehydrogenase, subunit D. | 0.411 |
SFM16290.1 | cdhA | SAMN04488696_0127 | SAMN04488696_0440 | 4-hydroxybenzoate synthetase (chorismate-pyruvate lyase). | acetyl-CoA decarbonylase/synthase alpha subunit; Part of the ACDS complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy. The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase. | 0.547 |
SFM16290.1 | cdhB | SAMN04488696_0127 | SAMN04488696_0441 | 4-hydroxybenzoate synthetase (chorismate-pyruvate lyase). | acetyl-CoA decarbonylase/synthase epsilon subunit; Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy. The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase. The precise role of the epsilon subunit is unclear; it may have a stabilizing role within the alpha(2)epsilon(2) component and/or be involved in electron transfer to FAD during a potential FAD- mediated CO oxidation. | 0.628 |
SFM44674.1 | SFM16290.1 | SAMN04488696_1248 | SAMN04488696_0127 | Hypothetical protein. | 4-hydroxybenzoate synthetase (chorismate-pyruvate lyase). | 0.560 |
SFM44674.1 | SFM44694.1 | SAMN04488696_1248 | SAMN04488696_1249 | Hypothetical protein. | Hypothetical protein. | 0.738 |
SFM44674.1 | SFM44709.1 | SAMN04488696_1248 | SAMN04488696_1250 | Hypothetical protein. | Amino-acid N-acetyltransferase. | 0.645 |
SFM44674.1 | SFM44728.1 | SAMN04488696_1248 | SAMN04488696_1251 | Hypothetical protein. | Uncharacterized protein. | 0.664 |
SFM44674.1 | SFM55706.1 | SAMN04488696_1248 | SAMN04488696_1582 | Hypothetical protein. | Formylmethanofuran dehydrogenase, subunit D. | 0.561 |
SFM44674.1 | SFM55742.1 | SAMN04488696_1248 | SAMN04488696_1584 | Hypothetical protein. | Formylmethanofuran dehydrogenase, subunit G. | 0.663 |
SFM44674.1 | cdhA | SAMN04488696_1248 | SAMN04488696_0440 | Hypothetical protein. | acetyl-CoA decarbonylase/synthase alpha subunit; Part of the ACDS complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy. The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase. | 0.683 |
SFM44674.1 | cdhB | SAMN04488696_1248 | SAMN04488696_0441 | Hypothetical protein. | acetyl-CoA decarbonylase/synthase epsilon subunit; Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy. The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase. The precise role of the epsilon subunit is unclear; it may have a stabilizing role within the alpha(2)epsilon(2) component and/or be involved in electron transfer to FAD during a potential FAD- mediated CO oxidation. | 0.686 |
SFM44674.1 | cdhD | SAMN04488696_1248 | SAMN04488696_0444 | Hypothetical protein. | acetyl-CoA decarbonylase/synthase delta subunit; Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy. Probably maintains the overall quaternary structure of the ACDS complex. | 0.620 |
SFM44674.1 | dut | SAMN04488696_1248 | SAMN04488696_2297 | Hypothetical protein. | dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.657 |
SFM44694.1 | SFM44674.1 | SAMN04488696_1249 | SAMN04488696_1248 | Hypothetical protein. | Hypothetical protein. | 0.738 |
SFM44694.1 | SFM44709.1 | SAMN04488696_1249 | SAMN04488696_1250 | Hypothetical protein. | Amino-acid N-acetyltransferase. | 0.774 |
SFM44694.1 | SFM44728.1 | SAMN04488696_1249 | SAMN04488696_1251 | Hypothetical protein. | Uncharacterized protein. | 0.809 |
SFM44709.1 | SFM44674.1 | SAMN04488696_1250 | SAMN04488696_1248 | Amino-acid N-acetyltransferase. | Hypothetical protein. | 0.645 |
SFM44709.1 | SFM44694.1 | SAMN04488696_1250 | SAMN04488696_1249 | Amino-acid N-acetyltransferase. | Hypothetical protein. | 0.774 |
SFM44709.1 | SFM44728.1 | SAMN04488696_1250 | SAMN04488696_1251 | Amino-acid N-acetyltransferase. | Uncharacterized protein. | 0.785 |
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