STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM48720.1Helix-turn-helix domain-containing protein. (184 aa)    
Predicted Functional Partners:
SFM79493.1
Copper chaperone.
  
  
 0.598
SFM48742.1
Xylose isomerase-like TIM barrel.
       0.495
SFM57456.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.489
SFM24652.1
RecJ-like exonuclease.
  
     0.472
SFM48766.1
Adenosylcobinamide hydrolase.
       0.461
SFM79821.1
Methyl-accepting chemotaxis protein.
  
  
  0.460
SFM67534.1
PEF-CTERM protein sorting domain-containing protein.
  
     0.457
mutS2
dsDNA-specific endonuclease/ATPase MutS2; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily.
       0.442
SFM48675.1
Protein of unknown function.
       0.442
SFM48696.1
Predicted DNA-binding protein with the Helix-hairpin-helix motif.
       0.442
Your Current Organism:
Methanolobus profundi
NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.