SFM83755.1 protein (Methanolobus profundi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFM83755.1

Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase. (854 aa)

Predicted Functional Partners:

SFM83779.1

0.933

SFM58585.1

0.756

SFM25542.1

0.691

SFM58607.1

0.672

SFM25563.1

0.666

SFM21012.1

0.657

SFM26778.1

0.637

SFM32808.1

0.596

SFM48289.1

0.565

SFM83800.1

0.563

Your Current Organism:

Methanolobus profundi

NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFM21012.1	SFM83755.1	SAMN04488696_0366	SAMN04488696_2548	Flagellar protein FlaJ.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.657
SFM25542.1	SFM25563.1	SAMN04488696_0578	SAMN04488696_0579	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.951
SFM25542.1	SFM58585.1	SAMN04488696_0578	SAMN04488696_1727	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.739
SFM25542.1	SFM83755.1	SAMN04488696_0578	SAMN04488696_2548	Flagellar protein FlaJ.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.691
SFM25563.1	SFM25542.1	SAMN04488696_0579	SAMN04488696_0578	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.951
SFM25563.1	SFM58607.1	SAMN04488696_0579	SAMN04488696_1728	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.741
SFM25563.1	SFM83755.1	SAMN04488696_0579	SAMN04488696_2548	Flagellar protein FlaJ.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.666
SFM26778.1	SFM83755.1	SAMN04488696_0637	SAMN04488696_2548	Flagellar protein FlaJ.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.637
SFM32808.1	SFM83755.1	SAMN04488696_0987	SAMN04488696_2548	Flagellar protein FlaJ.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.596
SFM48289.1	SFM83755.1	SAMN04488696_1415	SAMN04488696_2548	Hypothetical protein.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.565
SFM48289.1	SFM83779.1	SAMN04488696_1415	SAMN04488696_2549	Hypothetical protein.	Hypothetical protein.	0.696
SFM58585.1	SFM25542.1	SAMN04488696_1727	SAMN04488696_0578	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.739
SFM58585.1	SFM58607.1	SAMN04488696_1727	SAMN04488696_1728	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.966
SFM58585.1	SFM83755.1	SAMN04488696_1727	SAMN04488696_2548	Flagellar protein FlaJ.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.756
SFM58607.1	SFM25563.1	SAMN04488696_1728	SAMN04488696_0579	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.741
SFM58607.1	SFM58585.1	SAMN04488696_1728	SAMN04488696_1727	Flagellar protein FlaJ.	Flagellar protein FlaJ.	0.966
SFM58607.1	SFM83755.1	SAMN04488696_1728	SAMN04488696_2548	Flagellar protein FlaJ.	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	0.672
SFM83755.1	SFM21012.1	SAMN04488696_2548	SAMN04488696_0366	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	Flagellar protein FlaJ.	0.657
SFM83755.1	SFM25542.1	SAMN04488696_2548	SAMN04488696_0578	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	Flagellar protein FlaJ.	0.691
SFM83755.1	SFM25563.1	SAMN04488696_2548	SAMN04488696_0579	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.	Flagellar protein FlaJ.	0.666

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About