Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM45985.1 | SFM86193.1 | SAMN04488696_1306 | SAMN04488696_2674 | Ferredoxin-thioredoxin reductase, catalytic subunit. | Glutaredoxin. | 0.680 |
SFM49176.1 | SFM86193.1 | SAMN04488696_1459 | SAMN04488696_2674 | Iron-sulfur cluster insertion protein. | Glutaredoxin. | 0.547 |
SFM55764.1 | SFM86193.1 | SAMN04488696_1585 | SAMN04488696_2674 | Ferredoxin-thioredoxin reductase, catalytic subunit. | Glutaredoxin. | 0.612 |
SFM59316.1 | SFM86193.1 | SAMN04488696_1765 | SAMN04488696_2674 | Thioredoxin reductase (NADPH). | Glutaredoxin. | 0.637 |
SFM59316.1 | adk | SAMN04488696_1765 | SAMN04488696_2569 | Thioredoxin reductase (NADPH). | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.425 |
SFM59316.1 | msrA | SAMN04488696_1765 | SAMN04488696_0417 | Thioredoxin reductase (NADPH). | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.561 |
SFM68138.1 | SFM86193.1 | SAMN04488696_2022 | SAMN04488696_2674 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Glutaredoxin. | 0.931 |
SFM68138.1 | adk | SAMN04488696_2022 | SAMN04488696_2569 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.843 |
SFM68138.1 | dut | SAMN04488696_2022 | SAMN04488696_2297 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.846 |
SFM68138.1 | ndk | SAMN04488696_2022 | SAMN04488696_0484 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.915 |
SFM79253.1 | SFM86193.1 | SAMN04488696_2412 | SAMN04488696_2674 | Ferredoxin-thioredoxin reductase, catalytic subunit. | Glutaredoxin. | 0.722 |
SFM86193.1 | SFM45985.1 | SAMN04488696_2674 | SAMN04488696_1306 | Glutaredoxin. | Ferredoxin-thioredoxin reductase, catalytic subunit. | 0.680 |
SFM86193.1 | SFM49176.1 | SAMN04488696_2674 | SAMN04488696_1459 | Glutaredoxin. | Iron-sulfur cluster insertion protein. | 0.547 |
SFM86193.1 | SFM55764.1 | SAMN04488696_2674 | SAMN04488696_1585 | Glutaredoxin. | Ferredoxin-thioredoxin reductase, catalytic subunit. | 0.612 |
SFM86193.1 | SFM59316.1 | SAMN04488696_2674 | SAMN04488696_1765 | Glutaredoxin. | Thioredoxin reductase (NADPH). | 0.637 |
SFM86193.1 | SFM68138.1 | SAMN04488696_2674 | SAMN04488696_2022 | Glutaredoxin. | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.931 |
SFM86193.1 | SFM79253.1 | SAMN04488696_2674 | SAMN04488696_2412 | Glutaredoxin. | Ferredoxin-thioredoxin reductase, catalytic subunit. | 0.722 |
SFM86193.1 | adk | SAMN04488696_2674 | SAMN04488696_2569 | Glutaredoxin. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.530 |
SFM86193.1 | dut | SAMN04488696_2674 | SAMN04488696_2297 | Glutaredoxin. | dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.582 |
SFM86193.1 | msrA | SAMN04488696_2674 | SAMN04488696_0417 | Glutaredoxin. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.807 |
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