STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM88926.1Capsule polysaccharide biosynthesis protein. (489 aa)    
Predicted Functional Partners:
SFM88946.1
Methyltransferase domain-containing protein.
       0.655
SFM88903.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
       0.545
SFM88972.1
Pseudaminic acid synthase.
 
     0.530
SFM89084.1
Spore coat polysaccharide biosynthesis protein SpsF.
 
     0.465
SFM89057.1
Acetyltransferase (GNAT) domain-containing protein.
 
     0.444
SFM89157.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
 
     0.421
SFM88884.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase.
       0.420
Your Current Organism:
Methanolobus profundi
NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.