STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM89132.1dTDP-4-dehydrorhamnose 3,5-epimerase. (135 aa)    
Predicted Functional Partners:
SFM89157.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
  
 
 0.927
SFM89109.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.826
SFM89084.1
Spore coat polysaccharide biosynthesis protein SpsF.
  
    0.790
SFM89036.1
UDP-glucose 4-epimerase.
  
 
 0.760
SFM89057.1
Acetyltransferase (GNAT) domain-containing protein.
    
 0.750
SFM89206.1
GDPmannose 4,6-dehydratase.
  
 
 0.709
SFM49463.1
UDPglucose 6-dehydrogenase.
  
 
 0.675
SFM88995.1
Putative hydrolase of the HAD superfamily.
       0.632
SFM89016.1
Carbamoyl-phosphate synthase large subunit.
       0.623
SFM89396.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.620
Your Current Organism:
Methanolobus profundi
NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM
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