STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM92582.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (277 aa)    
Predicted Functional Partners:
SFM76340.1
L-histidine Nalpha-methyltransferase.
  
 
 0.662
SFM92565.1
cysteinyl-tRNA synthetase, unknown class.
 
     0.624
SFM92597.1
eRF1 domain-containing protein 2.
       0.619
SFM92622.1
Hypothetical protein.
       0.597
rlmE
23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
       0.536
SFM92659.1
Tetratricopeptide repeat-containing protein.
 
   
 0.468
Your Current Organism:
Methanolobus profundi
NCBI taxonomy Id: 487685
Other names: DSM 21213, M. profundi, Methanolobus profundi Mochimaru et al. 2009, Methanolobus sp. MobM, NBRC 104158, strain Mob M, strain MobM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.