STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG40794.1Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gfo:GFO_0761 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme. (383 aa)    
Predicted Functional Partners:
EEG42163.1
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: fjo:Fjoh_1927 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
  
 0.951
EEG41956.1
KEGG: fps:FP0256 homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
  
 
 0.895
EEG42439.1
Aspartate kinase; KEGG: gfo:GFO_1970 bifunctional aspartokinase/homoserine dehydrogenase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding.
  
 
 0.842
EEG40796.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: fjo:Fjoh_2141 oxidoreductase domain protein.
  
    0.774
EEG40793.1
Peroxiredoxin; PFAM: glutathione peroxidase; KEGG: fjo:Fjoh_2944 glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.773
EEG40795.1
PFAM: LmbE family protein; KEGG: fps:FP0656 hypothetical protein.
       0.773
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 
 0.710
EEG41079.1
Transketolase domain protein; PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: gfo:GFO_2068 2-oxoacid dehydrogenase E1 component subunits alpha and beta.
    
  0.701
EEG40797.1
Hypothetical protein.
       0.697
EEG42095.1
Aminotransferase class-III; PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; Peptidase M23; KEGG: gfo:GFO_1737 aminoglycoside phosphotransferase/class-III aminotransferase.
   
 
 0.683
Your Current Organism:
Flavobacteria bacterium MS0242A
NCBI taxonomy Id: 487796
Other names: F. bacterium MS024-2A, Flavobacteria bacterium MS024-2A
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