STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG40863.1PFAM: protein of unknown function UPF0118; KEGG: fps:FP1620 putative transporting permease. (362 aa)    
Predicted Functional Partners:
EEG40864.1
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pha:PSHAb0171 putative hydrolase.
       0.768
EEG40862.1
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.742
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.731
EEG40865.1
KEGG: pha:PSHAb0171 putative hydrolase.
       0.673
EEG40860.1
KEGG: gfo:GFO_1644 conserved hypothetical protein, secreted.
 
     0.650
EEG41594.1
KEGG: fjo:Fjoh_1216 hypothetical protein.
  
     0.527
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
    
  0.517
EEG42196.1
KEGG: fps:FP1805 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase domain protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
  0.502
EEG41482.1
KEGG: gfo:GFO_3292 hypothetical protein.
  
     0.447
EEG41281.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats.
  
     0.439
Your Current Organism:
Flavobacteria bacterium MS0242A
NCBI taxonomy Id: 487796
Other names: F. bacterium MS024-2A, Flavobacteria bacterium MS024-2A
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