STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG41220.1PFAM: cytochrome oxidase assembly; KEGG: gfo:GFO_2284 cytochrome oxidase assembly protein. (338 aa)    
Predicted Functional Partners:
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 0.991
EEG41708.1
PFAM: cytochrome C oxidase subunit II transmembrane region; KEGG: fps:FP0378 probable cytochrome c oxidase, subunit II precursor.
 
 
 0.925
EEG41709.1
PFAM: cytochrome c oxidase subunit I; KEGG: fps:FP0379 probable cytochrome c oxidase, subunit I precursor; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.910
EEG41727.1
PFAM: cytochrome c oxidase subunit III; KEGG: gfo:GFO_0190 cytochrome o ubiquinol oxidase subunit III.
 
 
 0.863
EEG41302.1
PFAM: peptidase M16 domain protein; KEGG: gfo:GFO_3583 secreted peptidase, family M16.
  
 
  0.832
EEG41726.1
PFAM: cytochrome c oxidase subunit III; KEGG: gfo:GFO_0189 cytochrome c oxidase subunit III.
 
 
 0.823
EEG41301.1
PFAM: peptidase M16 domain protein; KEGG: fjo:Fjoh_1544 peptidase M16 domain protein.
    
  0.809
EEG41219.1
KEGG: gfo:GFO_2286 hypothetical protein.
       0.792
EEG41221.1
TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: gfo:GFO_2283 tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.792
EEG41222.1
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: gfo:GFO_2282 protein containing YrdC domain; Belongs to the SUA5 family.
       0.789
Your Current Organism:
Flavobacteria bacterium MS0242A
NCBI taxonomy Id: 487796
Other names: F. bacterium MS024-2A, Flavobacteria bacterium MS024-2A
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