STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG41245.1KEGG: fjo:Fjoh_4978 hypothetical protein. (145 aa)    
Predicted Functional Partners:
EEG41244.1
KEGG: cph:Cpha266_0004 hypothetical protein.
       0.792
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
       0.792
EEG40753.1
KEGG: gfo:GFO_3049 secreted protein.
  
     0.746
EEG41541.1
KEGG: gfo:GFO_3435 hypothetical protein.
  
     0.730
EEG40716.1
KEGG: gfo:GFO_1792 hypothetical protein.
  
     0.726
EEG41247.1
KEGG: gfo:GFO_0794 protein containing tetratricopeptide repeats.
 
     0.723
EEG41329.1
KEGG: gfo:GFO_3546 hypothetical protein.
  
     0.711
EEG41041.1
KEGG: gfo:GFO_1483 secreted protein.
  
     0.710
EEG41729.1
KEGG: gfo:GFO_0192 membrane or secreted protein.
  
     0.707
EEG42412.1
KEGG: gfo:GFO_1857 hypothetical protein.
  
     0.702
Your Current Organism:
Flavobacteria bacterium MS0242A
NCBI taxonomy Id: 487796
Other names: F. bacterium MS024-2A, Flavobacteria bacterium MS024-2A
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