node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEG41310.1 | rnpA | Flav2ADRAFT_0614 | Flav2ADRAFT_0800 | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_3573 ribonuclease G. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.728 |
EEG41497.1 | rnpA | Flav2ADRAFT_0801 | Flav2ADRAFT_0800 | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: gfo:GFO_3319 secreted aminopeptidase, family M1. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.789 |
EEG42417.1 | rho | Flav2ADRAFT_1729 | Flav2ADRAFT_1709 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.799 |
EEG42417.1 | rnpA | Flav2ADRAFT_1729 | Flav2ADRAFT_0800 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.708 |
EEG42417.1 | rplC | Flav2ADRAFT_1729 | Flav2ADRAFT_1430 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.990 |
EEG42417.1 | rplD | Flav2ADRAFT_1729 | Flav2ADRAFT_1431 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.998 |
EEG42417.1 | rpsJ | Flav2ADRAFT_1729 | Flav2ADRAFT_1429 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.997 |
EEG42417.1 | rpsL | Flav2ADRAFT_1729 | Flav2ADRAFT_1426 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
EEG42417.1 | rpsT | Flav2ADRAFT_1729 | Flav2ADRAFT_1708 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.919 |
EEG42417.1 | yidC | Flav2ADRAFT_1729 | Flav2ADRAFT_0500 | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | 60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.509 |
rho | EEG42417.1 | Flav2ADRAFT_1709 | Flav2ADRAFT_1729 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | 0.799 |
rho | rnpA | Flav2ADRAFT_1709 | Flav2ADRAFT_0800 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.721 |
rho | rplC | Flav2ADRAFT_1709 | Flav2ADRAFT_1430 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.635 |
rho | rplD | Flav2ADRAFT_1709 | Flav2ADRAFT_1431 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.426 |
rho | yidC | Flav2ADRAFT_1709 | Flav2ADRAFT_0500 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.799 |
rnpA | EEG41310.1 | Flav2ADRAFT_0800 | Flav2ADRAFT_0614 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_3573 ribonuclease G. | 0.728 |
rnpA | EEG41497.1 | Flav2ADRAFT_0800 | Flav2ADRAFT_0801 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: gfo:GFO_3319 secreted aminopeptidase, family M1. | 0.789 |
rnpA | EEG42417.1 | Flav2ADRAFT_0800 | Flav2ADRAFT_1729 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | PFAM: RNA binding S1 domain protein; KEGG: gfo:GFO_1849 30S ribosomal protein S1. | 0.708 |
rnpA | rho | Flav2ADRAFT_0800 | Flav2ADRAFT_1709 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.721 |
rnpA | rplC | Flav2ADRAFT_0800 | Flav2ADRAFT_1430 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.751 |