STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG41819.1PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: gfo:GFO_1158 GntR family transcriptional regulator protein. (230 aa)    
Predicted Functional Partners:
EEG41820.1
PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0258 major facilitator superfamily MFS_1.
 
     0.890
EEG41821.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gfo:GFO_1160 short-chain dehydrogenase/reductase family protein.
 
 
  0.878
EEG41817.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gfo:GFO_1153 TonB-dependent outer membrane receptor.
 
    0.789
EEG41813.1
PFAM: Alginate lyase 2; KEGG: gfo:GFO_1148 secreted alginate lyase-like protein.
 
     0.762
EEG41818.1
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1154 SusD/RagB family protein.
 
     0.698
EEG41816.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: gfo:GFO_1152 pectin degradation protein.
 
    0.676
EEG40890.1
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mms:mma_2504 hypothetical protein.
    
  0.557
EEG41105.1
PFAM: ferredoxin; KEGG: fjo:Fjoh_1324 ferredoxin.
    
  0.508
EEG41814.1
PFAM: natural resistance-associated macrophage protein; KEGG: pat:Patl_3643 natural resistance-associated macrophage protein.
 
     0.475
EEG41885.1
PFAM: OmpA/MotB domain protein; KEGG: abo:ABO_1992 hypothetical protein.
  
     0.466
Your Current Organism:
Flavobacteria bacterium MS0242A
NCBI taxonomy Id: 487796
Other names: F. bacterium MS024-2A, Flavobacteria bacterium MS024-2A
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