STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG42258.1Hypothetical protein; KEGG: she:Shewmr4_3619 TPR repeat-containing protein. (230 aa)    
Predicted Functional Partners:
EEG42260.1
KEGG: bvu:BVU_0460 hypothetical protein.
 
     0.700
EEG42259.1
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: bth:BT_1568 hypothetical protein.
 
     0.691
EEG42261.1
PFAM: nitroreductase; KEGG: chu:CHU_1678 NAD(P)H-flavin oxidoreductase.
       0.440
EEG42262.1
PFAM: Aldehyde Dehydrogenase_; KEGG: fjo:Fjoh_4713 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.437
ilvD
KEGG: gfo:GFO_2113 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
     0.405
Your Current Organism:
Flavobacteria bacterium MS0242A
NCBI taxonomy Id: 487796
Other names: F. bacterium MS024-2A, Flavobacteria bacterium MS024-2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.