Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKK66086.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)    
Predicted Functional Partners:
AKK66087.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
mlaD
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
AKK68956.1
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.990
AKK66083.1
Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.975
AKK66084.1
Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.972
AKK68957.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.962
AKK68955.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.926
AKK66082.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.811
AKK67885.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.561
AKK68276.1
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.561
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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