Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKK66171.1Porphyrin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)    
Predicted Functional Partners:
AKK66172.1
uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.967
AKK66173.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
   
 0.854
AKK66520.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.745
lolB
Membrane protein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
     0.703
AKK68878.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
AKK69178.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
AKK66174.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.616
AKK68925.1
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
AKK68346.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.596
AKK67128.1
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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