Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKK66367.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)    
Predicted Functional Partners:
AKK68588.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.644
AKK66209.1
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.613
AKK66369.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.553
AKK66368.1
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
AKK66370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.534
AKK66366.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
AKK66211.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
AKK68925.1
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
AKK69146.1
Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.
  
    0.443
AKK68722.1
Endoribonuclease L-PSP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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