Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKK66373.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (930 aa)    
Predicted Functional Partners:
AKK68214.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.547
AKK67542.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.544
AKK66336.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
AKK69318.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
AKK65997.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.483
AKK66037.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
AKK66242.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
AKK68608.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.449
AKK68824.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
AKK66727.1
Dipeptidyl-peptidase 7; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.435
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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