Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKK66421.1Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
AKK68695.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.959
AKK68698.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.891
pilO
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.890
AKK68699.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.887
AKK68696.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
AKK66793.1
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.761
AKK66777.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.740
AKK68072.1
Pilus assembly protein PilE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.727
AKK68075.1
Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.689
AKK68597.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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