Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKK66587.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (827 aa)    
Predicted Functional Partners:
AKK66588.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.977
AKK66589.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.974
AKK66308.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.651
AKK66307.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.640
lolD
Lipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
  
  
 0.573
AKK66586.1
GIY-YIG endonuclease domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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