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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKK66610.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)    
Predicted Functional Partners:
AKK66609.1
ATP--cobalamin adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.744
AKK68928.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
AKK66608.1
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.649
AKK68211.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
AKK69506.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
AKK67659.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
ubiH
2-octaprenyl-6-methoxyphenyl hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.577
AKK69215.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
AKK66644.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
AKK68775.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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