Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AKK66831.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)    
Predicted Functional Partners:
AKK66832.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.986
AKK66095.1
Plasmid stabilization protein ParE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.706
vapC
DNA-binding protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
   
   0.706
AKK66105.1
Plasmid stabilization protein ParE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.702
AKK66092.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.692
AKK66833.1
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.590
AKK68003.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
AKK67646.1
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
AKK66131.1
Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
AKK66830.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.489
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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