Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKK67066.1General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
AKK66128.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.641
AKK66462.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
AKK69082.1
Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.542
AKK66357.1
BrkB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.535
AKK69081.1
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.510
AKK66119.1
Phytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
AKK67482.1
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.444
AKK67067.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.442
AKK66464.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
AKK66466.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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