STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKK67281.1Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1438 aa)    
Predicted Functional Partners:
AKK67282.1
Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
   
0.845
AKK67280.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.762
AKK66131.1
Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
AKK67283.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AKK66130.1
Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.700
AKK67646.1
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.693
AKK67424.1
Polysaccharide biosynthesis protein GumF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
AKK68003.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
AKK67426.1
GDP-mannose:glycolipid 4-beta-D-mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.674
AKK68564.1
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.