STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKK67355.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (802 aa)    
Predicted Functional Partners:
AKK68507.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
tssK-2
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
AKK68491.1
Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
tssM-2
Type VI secretion protein VasK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
AKK68499.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
AKK68508.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.696
AKK68485.1
Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
AKK69140.1
PAAR motif family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
tssA
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
tssJ
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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