Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKK67435.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (129 aa)    
Predicted Functional Partners:
emrB
Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
  
 
 0.675
AKK68110.1
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
  
 
 0.607
AKK68172.1
Multidrug RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.578
AKK67436.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.565
AKK66857.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.542
AKK68762.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.542
AKK68396.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.540
AKK66292.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.537
AKK68109.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.524
cyoD
Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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