Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKK67541.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
AKK68919.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.728
AKK67543.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.714
AKK66764.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
AKK67542.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.668
AKK67540.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
AKK68033.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
AKK67544.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
AKK67545.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
AKK69245.1
Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
AKK66782.1
Characterized ACR protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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