Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slyXHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SlyX family. (78 aa)    
Predicted Functional Partners:
AKK67548.1
UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.847
AKK67550.1
Nucleoprotein/polynucleotide-associated enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.784
AKK67547.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.767
AKK67551.1
Acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.705
AKK67202.1
Diadenosine tetraphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.641
AKK67552.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.602
AKK67546.1
Vitamin B12 ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.
  
    0.518
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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