Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKK67567.1Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)    
Predicted Functional Partners:
AKK68076.1
Prepilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.901
AKK68073.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.879
AKK68072.1
Pilus assembly protein PilE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.854
AKK68075.1
Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.796
AKK68074.1
PilX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.795
AKK68696.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.789
pilO
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.767
AKK68698.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.746
AKK68699.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.646
AKK66777.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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