Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKK67846.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)    
Predicted Functional Partners:
AKK67844.1
RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.978
AKK68362.1
RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.845
fliS
Flagellar biosynthesis protein FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.842
AKK67845.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.833
fliE
Flagellar hook-basal body protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.791
AKK67876.1
Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.772
AKK66165.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.700
AKK67838.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.654
fliD
Flagellar protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.628
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
  
 0.607
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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