Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKK68462.1Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (880 aa)    
Predicted Functional Partners:
AKK67357.1
1,4-beta-D-glucan glucohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.928
AKK67469.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.927
AKK69117.1
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.927
AKK66364.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.926
AKK67004.1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.925
AKK67295.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.918
AKK66122.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
  0.912
AKK66123.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.902
AKK66124.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.902
AKK68461.1
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.829
Your Current Organism:
Xanthomonas translucens
NCBI taxonomy Id: 487909
Other names: X. translucens pv. undulosa, Xanthomonas translucens pv. undulosa
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