STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX22557.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
SDX22439.1
Broad specificity phosphatase PhoE.
 
     0.590
SDW98084.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.588
SDX22518.1
Hypothetical protein.
       0.531
SDW83513.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.510
SDX36443.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.470
SDW55194.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.460
SDX35876.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.460
SDX22492.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.446
SDX22415.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.441
SDX22467.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
  
    0.436
Your Current Organism:
Marinobacter mobilis
NCBI taxonomy Id: 488533
Other names: CGMCC 1.7059, JCM 15154, M. mobilis, Marinobacter mobilis Huo et al. 2008, Marinobacter sp. CN46, Marinobacter sp. CN71, strain CN46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.