Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDW36583.1 | SDX25481.1 | SAMN04487960_102278 | SAMN04487960_107218 | Protein of unknown function. | HopJ type III effector protein. | 0.422 |
SDX25417.1 | SDX25449.1 | SAMN04487960_107216 | SAMN04487960_107217 | PEP-CTERM protein-sorting domain-containing protein. | Hypothetical protein. | 0.499 |
SDX25417.1 | SDX25481.1 | SAMN04487960_107216 | SAMN04487960_107218 | PEP-CTERM protein-sorting domain-containing protein. | HopJ type III effector protein. | 0.499 |
SDX25417.1 | minC | SAMN04487960_107216 | SAMN04487960_107219 | PEP-CTERM protein-sorting domain-containing protein. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.499 |
SDX25449.1 | SDX25417.1 | SAMN04487960_107217 | SAMN04487960_107216 | Hypothetical protein. | PEP-CTERM protein-sorting domain-containing protein. | 0.499 |
SDX25449.1 | SDX25481.1 | SAMN04487960_107217 | SAMN04487960_107218 | Hypothetical protein. | HopJ type III effector protein. | 0.902 |
SDX25449.1 | SDX25543.1 | SAMN04487960_107217 | SAMN04487960_107220 | Hypothetical protein. | Septum site-determining protein MinD. | 0.471 |
SDX25449.1 | minC | SAMN04487960_107217 | SAMN04487960_107219 | Hypothetical protein. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.787 |
SDX25449.1 | minE | SAMN04487960_107217 | SAMN04487960_107221 | Hypothetical protein. | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | 0.471 |
SDX25481.1 | SDW36583.1 | SAMN04487960_107218 | SAMN04487960_102278 | HopJ type III effector protein. | Protein of unknown function. | 0.422 |
SDX25481.1 | SDX25417.1 | SAMN04487960_107218 | SAMN04487960_107216 | HopJ type III effector protein. | PEP-CTERM protein-sorting domain-containing protein. | 0.499 |
SDX25481.1 | SDX25449.1 | SAMN04487960_107218 | SAMN04487960_107217 | HopJ type III effector protein. | Hypothetical protein. | 0.902 |
SDX25481.1 | SDX25543.1 | SAMN04487960_107218 | SAMN04487960_107220 | HopJ type III effector protein. | Septum site-determining protein MinD. | 0.492 |
SDX25481.1 | minC | SAMN04487960_107218 | SAMN04487960_107219 | HopJ type III effector protein. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.815 |
SDX25481.1 | minE | SAMN04487960_107218 | SAMN04487960_107221 | HopJ type III effector protein. | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | 0.549 |
SDX25481.1 | ubiC | SAMN04487960_107218 | SAMN04487960_10199 | HopJ type III effector protein. | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.413 |
SDX25543.1 | SDX25449.1 | SAMN04487960_107220 | SAMN04487960_107217 | Septum site-determining protein MinD. | Hypothetical protein. | 0.471 |
SDX25543.1 | SDX25481.1 | SAMN04487960_107220 | SAMN04487960_107218 | Septum site-determining protein MinD. | HopJ type III effector protein. | 0.492 |
SDX25543.1 | minC | SAMN04487960_107220 | SAMN04487960_107219 | Septum site-determining protein MinD. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.999 |
SDX25543.1 | minE | SAMN04487960_107220 | SAMN04487960_107221 | Septum site-determining protein MinD. | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | 0.999 |
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