STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX54278.1Protein of unknown function. (69 aa)    
Predicted Functional Partners:
SDX54211.1
Hypothetical protein.
 
     0.841
SDX54174.1
Cytochrome c oxidase assembly protein subunit 15.
 
    0.762
SDX54246.1
Cytochrome oxidase assembly protein ShyY1.
 
     0.749
SDW77311.1
Hypothetical protein.
 
     0.659
SDX54137.1
Protoheme IX farnesyltransferase.
 
     0.642
SDX23511.1
Hypothetical protein.
  
    0.608
SDX10327.1
Peptidoglycan-binding protein, CsiV.
  
     0.542
SDW53843.1
AmpE protein.
  
     0.528
SDX23485.1
Hypothetical protein.
  
     0.520
SDX54099.1
Protein SCO1/2.
       0.515
Your Current Organism:
Marinobacter mobilis
NCBI taxonomy Id: 488533
Other names: CGMCC 1.7059, JCM 15154, M. mobilis, Marinobacter mobilis Huo et al. 2008, Marinobacter sp. CN46, Marinobacter sp. CN71, strain CN46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.