STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM00002.1TRAP transporter, 4TM/12TM fusion protein. (723 aa)    
Predicted Functional Partners:
SFL99986.1
Hypothetical protein.
 
 
  0.994
SFM14803.1
Hypothetical protein.
 
    0.844
SFM18818.1
Putative tricarboxylic transport membrane protein.
  
     0.627
SFM18841.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
     0.570
SFM00020.1
Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB.
       0.518
SFM00038.1
Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD.
       0.518
SFM18661.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.475
SFM71740.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.471
Your Current Organism:
Marinobacter zhejiangensis
NCBI taxonomy Id: 488535
Other names: CGMCC 1.7061, JCM 15156, M. zhejiangensis, Marinobacter sp. CN74, Marinobacter zhejiangensis Huo et al. 2008, strain CN74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.